Programmer Guide/Command Reference/EVAL/haclust: Difference between revisions
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;Usage 1:<code>haclust(<var>d</var>, <var>m</var>)</code> | ;Usage 1:<code>haclust(<var>d</var>, <var>m</var>)</code> | ||
:;<var>d</var>: A dissimilarity or distance matrix. For N data points this is a NxN matrix (e.g. created using the function [[../dist|dist]]) | :;<var>d</var>: A dissimilarity or distance matrix. For N data points this is a NxN matrix (e.g. created using the function [[../dist|dist]]) | ||
:;<var> | :;<var>mflag</var>:The cluster method: | ||
::{|class="einrahmen" | ::{|class="einrahmen" | ||
!'' | !''mflag'' !! method | ||
|- | |- | ||
|0 ||Single Linkage | |0 ||Single Linkage | ||
| Line 22: | Line 22: | ||
|6 ||Ward | |6 ||Ward | ||
|} | |} | ||
;Result 1: The result is a cluster hierarchy. This is a 3x(N-1) table containing the merged cluster pairs and the agglomeration niveaus. | ;Result 1: The result is a cluster hierarchy table ''htable''. This is a 3x(N-1) table containing the merged cluster pairs and the agglomeration niveaus. | ||
---- | ---- | ||
;Usage 2:<code>haclust(<var> | ;Usage 2:<code>haclust(<var>htable</var>, <var>nclust</var>)</code> ... create partition table: | ||
: | ;Usage 3:<code>haclust(<var>ptable</var>, <var>iclust</var>)</code> ... extract cluster data: | ||
---- | ---- | ||
See also: [[../modclust|modclust]] | ;See also: For a detailed description of '''Usage 2''' and '''Usage 3''' and the format of the hierarchy ''htable'' and the partition table ''ptable'' see [[../modclust|modclust]]. | ||
:[[../modclust|modclust]], [[../em|em]], [[../density|density]], [[../svd|svd]], [[../dist|dist]] | |||
[[../#Functions|<function list>]] | |||
Example: | Example: | ||
<pre> | <pre> | ||
[macro haclust_example] | [macro haclust_example] | ||
// create bivariate input data | // create bivariate input data | ||
Latest revision as of 10:46, 21 April 2011
Hierarchical-agglomerative cluster analysis.
- Usage 1
haclust(d, m)- d
- A dissimilarity or distance matrix. For N data points this is a NxN matrix (e.g. created using the function dist)
- mflag
- The cluster method:
mflag method 0 Single Linkage 1 Complete Linkage 2 Weighted Average Linkage 3 Average Linkage 4 Median 5 Centroid 6 Ward
- Result 1
- The result is a cluster hierarchy table htable. This is a 3x(N-1) table containing the merged cluster pairs and the agglomeration niveaus.
- Usage 2
haclust(htable, nclust)... create partition table:- Usage 3
haclust(ptable, iclust)... extract cluster data:
- See also
- For a detailed description of Usage 2 and Usage 3 and the format of the hierarchy htable and the partition table ptable see modclust.
- modclust, em, density, svd, dist
Example:
[macro haclust_example]
// create bivariate input data
#datatable := new table * 2 /p num:x num:y
$#datatable[*,0] := '1;2;1;3;4.5'
$#datatable[*,1] := '1;0.5;4;2;4'
// compute distance matrix
#disttable := eval dist($#datatable)
// cluster analysis methods:
// 0 (SL), 1 (CL), 2 (WAL), 3 (AL), 4 (M), 5 (C), 6 (W)
#method := 6 // Ward
// nr of clusters
#nclusters := 2
// compute hierarchy and partition
#hierarchy := eval haclust($#disttable,$#method)
#partition := eval haclust($#hierarchy,$#nclusters)
// show results
showitem $#hierarchy
showitem $#partition
exit
