haclust

Hierarchical-agglomerative cluster analysis.

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Usage 1

haclust(d, m)

d

A dissimilarity or distance matrix. For N data points this is a NxN matrix (e.g. created using the function dist)

mflag

The cluster method:

mflag	method
0	Single Linkage
1	Complete Linkage
2	Weighted Average Linkage
3	Average Linkage
4	Median
5	Centroid
6	Ward

Result 1

The result is a cluster hierarchy table htable. This is a 3x(N-1) table containing the merged cluster pairs and the agglomeration niveaus.

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Usage 2

haclust(htable, nclust) ... create partition table:

Usage 3

haclust(ptable, iclust) ... extract cluster data:

For a detailed description of Usage 2 and Usage 3 and the format of the hierarchy htable and the partition table ptable see modclust.

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See also

modclust, em, density, svd

Example:

[macro haclust_example]
// create bivariate input data
#datatable := new table * 2 /p num:x num:y
$#datatable[*,0] := '1;2;1;3;4.5'
$#datatable[*,1] := '1;0.5;4;2;4'
        
// compute distance matrix
#disttable := eval dist($#datatable)

// cluster analysis methods:
// 0 (SL), 1 (CL), 2 (WAL), 3 (AL), 4 (M), 5 (C), 6 (W)
#method := 6    // Ward

// nr of clusters
#nclusters := 2

// compute hierarchy and partition
#hierarchy := eval haclust($#disttable,$#method)
#partition := eval haclust($#hierarchy,$#nclusters)

// show results
showitem $#hierarchy
showitem $#partition
exit

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